MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
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Items 21 - 40
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of 242 pages
Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000010.1
SEQF5015_00167
Genome Viewer
NA
AA
1647/549
162994-161348
hypothetical protein
SEQF5015|JADGKR010000010.1
SEQF5015_00169
Genome Viewer
NA
AA
483/161
164379-164861
hypothetical protein
SEQF5015|JADGKR010000010.1
SEQF5015_00170
Genome Viewer
NA
AA
792/264
164961-165752
hypothetical protein
SEQF5015|JADGKR010000010.1
SEQF5015_00171
Genome Viewer
NA
AA
471/157
166664-167134
hypothetical protein
SEQF5015|JADGKR010000110.1
SEQF5015_00172
Genome Viewer
NA
AA
657/219
50-706
ISAs1 family transposase ISEc1
SEQF5015|JADGKR010000111.1
SEQF5015_00173
Genome Viewer
NA
AA
366/122
116-481
hypothetical protein
SEQF5015|JADGKR010000116.1
SEQF5015_00174
Genome Viewer
NA
AA
378/126
20-397
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00181
Genome Viewer
NA
AA
714/238
5884-5171
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00182
Genome Viewer
NA
AA
405/135
6314-5910
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00186
Genome Viewer
NA
AA
762/254
10694-11455
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00187
Genome Viewer
NA
AA
1494/498
11475-12968
N-acetylgalactosamine-6-O-sulfatase
SEQF5015|JADGKR010000011.1
SEQF5015_00188
Genome Viewer
NA
AA
1245/415
13098-14342
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00191
Genome Viewer
NA
AA
960/320
17722-16763
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00193
Genome Viewer
NA
AA
1422/474
20734-19313
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00204
Genome Viewer
NA
AA
219/73
34630-34412
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00205
Genome Viewer
NA
AA
396/132
34665-35060
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00220
Genome Viewer
NA
AA
468/156
51437-50970
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00221
Genome Viewer
NA
AA
600/200
52072-51473
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00238
Genome Viewer
NA
AA
1611/537
74737-73127
hypothetical protein
SEQF5015|JADGKR010000011.1
SEQF5015_00276
Genome Viewer
NA
AA
441/147
117649-117209
hypothetical protein
🡄
Items 21 - 40
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click arrow to navigate by page or
of 242 pages
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JBrowse Genome Viewer
* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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